dentist.util.fasta

Some functions to work with FASTA data.

Members

complement C complement(C base): Get the complement of a DNA base. Only bases A, T, C, G will be translated; all other characters are left as is. Replacement preserves casing of the characters.
parseFasta Fasta!T parseFasta(T data): Convenience wrapper around Fasta!T(T data).
parseFastaRecord FastaRecord!T parseFastaRecord(T data): Convenience wrapper around FastaRecord!T(T data).
parsePacBioHeader PacBioHeader!T parsePacBioHeader(T header): Convenience wrapper around PacBioHeader!T(T header).
reverseComplement T reverseComplement(in T sequence): Compute the reverse complement of a DNA sequence. Only bases A, T, C, G will be translated; all other characters are left as is. Replacement preserves casing of the characters.
reverseComplementer auto reverseComplementer(Range sequence): Compute the reverse complement of a DNA sequence. Only bases A, T, C, G will be translated; all other characters are left as is. Replacement preserves casing of the characters.

Fasta template Fasta(T): Gives access to FASTA data. Does not copy the input sequence.
FastaRecord template FastaRecord(T): Gives access to a single FASTA record. Does not copy the input sequence.
PacBioHeader template PacBioHeader(T)