Defines bindings and utilities to/for the dazzler commands.
Thrown on failure while reading a Dazzler mask.
Options for computeintrinsicqv.
Options for DBdump.
Options for DBshow.
Options for daccord.
Options for daligner.
Options for damapper.
Options for fasta2DAM and fasta2DB.
Options for LAdump.
Options for lasfilteralignments.
Determines how data should be provided in the working directory.
Build a .dam file with the given set of FASTA records.
Build a new .dam file by using the given subset of reads in inDbFile.
Self-dalign dbFile and build consensus using daccord.
Get the designated set of records in FASTA format. If recordNumbers is empty the whole DB will be converted.
Get the FASTA sequence of the designated record with prefetching to reduce forks.
Get the FASTA sequences of the designated records.
Return a list of hidden files associated to every .dam/.db file. These files contain the actual data used in all the computation. Thus, we carefully check for their existence.
Get the hidden files comprising the designated mask.
Returns true iff lasFile contains zero parts.
Provide dbFile in workdir.
Provide file in workdir.
Provide lasFile in workdir.
Read the Regions of a Dazzler mask for dbFile.
Write the list of regions to a Dazzler mask for dbFile.