dentist ~master (2019-01-03T11:08:59Z)

LasFilterAlignmentsOptions

dentist dazzler

Options for lasfilteralignments.

Values

Value	Meaning
errorThresold`"-e"`	Error threshold for proper alignment termination (default: 0.35)

Meta

Source

See Implementation

dentist dazzler classes

MaskReaderException

enums

ComputeIntrinsicQVOptions
DBdumpOptions
DBshowOptions
DaccordOptions
DalignerOptions
DamapperOptions
Fasta2DazzlerOptions
LAdumpOptions
LasFilterAlignmentsOptions
ProvideMethod

functions

buildDamFile
dbSubset
getConsensus
getFastaEntries
getFastaSequence
getFastaSequences
getHiddenDbFiles
getMaskFiles
lasEmpty
provideDamFileInWorkdir
provideFileInWorkdir
provideLasFileInWorkdir
readMask
writeMask

manifest constants

damFileExtension
dbFileExtension
minSequenceLength

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