dentist ~master (2019-01-03T11:08:59Z)
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getConsensus
dentist
dazzler
Self-dalign dbFile and build consensus using daccord.
string
getConsensus
(
in
string
dbFile
,
in
size_t
readId
,
in
Options
options
)
string
getConsensus
(
in
string
dbFile
,
in
Options
options
)
string
getConsensus
(
Options
)
(
in
string
dbFile
,
in
Options
options
)
if
(
isOptionsList
!(
typeof
(
options.daccordOptions
)) &&
isOptionsList
!(
typeof
(
options.lasFilterAlignmentsOptions
))
&&
isOptionsList
!(
typeof
(
options.dalignerOptions
))
&&
isOptionsList
!(
typeof
(
options.dbsplitOptions
))
&&
isSomeString
!(
typeof
(
options.workdir
))
)
Return Value
Type:
string
list of consensus DBs.
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dentist
dazzler
classes
MaskReaderException
enums
ComputeIntrinsicQVOptions
DBdumpOptions
DBshowOptions
DaccordOptions
DalignerOptions
DamapperOptions
Fasta2DazzlerOptions
LAdumpOptions
LasFilterAlignmentsOptions
ProvideMethod
functions
buildDamFile
dbSubset
getConsensus
getFastaEntries
getFastaSequence
getFastaSequences
getHiddenDbFiles
getMaskFiles
lasEmpty
provideDamFileInWorkdir
provideFileInWorkdir
provideLasFileInWorkdir
readMask
writeMask
manifest constants
damFileExtension
dbFileExtension
minSequenceLength
Self-dalign dbFile and build consensus using daccord.