dentist ~master (2019-01-03T11:08:59Z)
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RepeatMaskAssessor
dentist
commands
maskRepetitiveRegions
This class comprises the
collectPileUps
step of the
dentist
algorithm
class
RepeatMaskAssessor {
Options
options
;
AlignmentChain
[]
selfAlignment
;
AlignmentChain
[]
readsAlignment
;
ReferenceRegion
repetitiveRegions
;
}
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dentist
commands
maskRepetitiveRegions
aliases
Options
classes
BadAlignmentCoverageAssessor
RepeatMaskAssessor
functions
assessmentStage
execute
interfaces
RepeatAssessor
This class comprises the collectPileUps step of the dentist algorithm