BadAlignmentCoverageAssessor

Mask reference regions where the alignment coverage is not within set limits. This helps to identify repetitive or bad quality regions.

class BadAlignmentCoverageAssessor : RepeatAssessor {

double lowerLimit;

double upperLimit;

this(double lowerLimit, double upperLimit);

ReferenceRegion opCall(const(AlignmentChain[]) alignments);

}

Constructors

this this(double lowerLimit, double upperLimit): Create an assessor with these limits.

Members

Functions

opCall ReferenceRegion opCall(const(AlignmentChain[]) alignments): Apply the assessor to the given set of alignment.

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Source

See Implementation

dentist commands maskRepetitiveRegions aliases

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interfaces

RepeatAssessor