1 auto pileUp = [ 2 ReadAlignment(SeededAlignment(), SeededAlignment()), ReadAlignment(SeededAlignment()) 3 ]; 4 auto allAlignmentChains = pileUp.getAlignmentRefs(); 5 6 assert(allAlignmentChains.length == 3); 7 assert(pileUp[0][0].id == 0); 8 assert(pileUp[0][1].id == 0); 9 assert(pileUp[1][0].id == 0); 10 11 allAlignmentChains[0].id = 1; 12 allAlignmentChains[1].id = 2; 13 allAlignmentChains[2].id = 3; 14 15 assert(pileUp[0][0].id == 1); 16 assert(pileUp[0][1].id == 2); 17 assert(pileUp[1][0].id == 3);
Returns a list of pointers to all involved alignment chains.